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Aplicacións

fastx

Versións dispoñibles:

FinisTerraeII

  • 0.0.14

Descrición


The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information).

The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others.

However,
It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

Guía de uso


FT2:

Please use the following module commands:

module spider fastx

Check the fastx available versions

module load compiler/version fastx/version

Load specific version environment

module help fastx

Get a brief server specific user guide

 

SVG:

Please use the following module commands:

module av fastx

Check the fastx available versions

module help fastx

Get a brief server specific user guide

module load fastx

Load default version environment

module load fastx/<version>

Load specific version environment

 

URL Manual

Soporte


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